Computational Epigenomics

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RnBeads

We co-developed and are maintaining RnBeads - an R package for the comprehensive analysis of genome-wide methylation data. More information is available on the official web site of the tool, as well as in its dedicated publication.

EpiAnnotator

EpiAnnotator is a web service that provides enrichment analysis results along with high quality figures.

echipp

echipp is a full solution for evaluating and comparing large-scale ChIP-seq experiments.

MeViz

MeViz is an R package for the visualization of heterogeneous methylation data.

Gff3ToBed

Gff3ToBed is a Linux tool for the convertion of Gff3 to Bed files.